The Stanley Neuropathology Consortium Integrative Database

The Stanley Neuropathology Consortium Integrative Database is a web-based tool that integrates SMRI data sets and analysis software.

Diagram

Data sets used in the SNCID

  • Integrative analysis module
    • 4078 neuropathology datasets
    • 23 gene expression microarray datasets
    • RNA-Seq datasets from hippocampus of Neuropathology Consortium collection
    • Genome-wide SNP data and individually genotyped SNP data
  • Downloading raw data
    • Raw neuropathology datasets
  • Available NGS data
    • Neuropathology Consortium collection, Frontal cortex, RNA-Seq data
    • Neuropathology Consortium collection, Hippocampus, RNA-Seq data
    • Neuropathology Consortium collection, Orbitofrontal cortex, RNA-Seq data
    • Array Collection, Cingulate cortex, RNA-Seq data
    • Array Collection, Hippocampus, RNA-Seq data
    • Depression Collection, Frontal cortex, RNA-Seq data
    • Depression Collection, Cingulate cortex, RNA-Seq data
Citation
About The Stanley Neuropathology Consortium

The Neuropathology Consortium is a collection of 60 brains, consisting of 15 each diagnosed with schizophrenia, bipolar disorder, or major depression, and unaffected controls. The four groups are matched by age, sex, race, postmortem interval, pH, side of brain, and mRNA quality as summarized in the Demographic Details Chart.

Coded specimens are sent to researchers with the code varying from researcher to researcher to ensure that all studies are blinded. The code is released to the researcher only when the data have been collected and submitted to SMRI.

Further information about tissue availability, conditions for tissue use and how to request tissue is available of the SMRI homepage.